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0.7.0
by The COBRApy Team
Fixes
cobra.flux_analysis.reaction.assess
was broken following the release of 0.6.0 and has now been fixed (and now with unit tests).
production_envelope
failed when model C-source was formulated as -> x instead of x <-. Fixed added option to guess the C-source by taking the medium reaction with the highest input C flux.model_to_pymatbridge
needs scipy and that’s correctly handled now.
New features
flux_variability_analysis
now has thepfba_factor
parameter which enables the inclusion of a constraint on the max sum of absolute fluxes when doing FVA.
Deprecated features
cobra.flux_analysis.reaction.assess_{precursors,products}
were essentially copies of each other and have been merged tocobra.flux_analysis.reaction.assess_component