tangiCode¶

findMinimalSetOfRxns(model)[source]¶

This function finds the minimal set of reactions subject to a LP objective function \(min ||x||_0\) \(min c'x\) s.t. \(Sx = b\) \(lb <= x <= ub\)

Usage

[result_tab, sol, lprxns, l1rxns, l0rxns] = findMinimalSetOfRxns(model)

Input

model – COBRA model structure

Outputs

resutl_tab – number of reactions obtained for each condition

sol – x - solution vector

lprxns – rxns indices for LP solution

l1rxns – rxns indices for L1 solution

l0rxns – rxns indices for L0 solution