tangiCode

findMinimalSetOfRxns(model)[source]

This function finds the minimal set of reactions subject to a LP objective function \(min ||x||_0\) \(min c'x\) s.t. \(Sx = b\) \(lb <= x <= ub\)

Usage

[result_tab, sol, lprxns, l1rxns, l0rxns] = findMinimalSetOfRxns(model)

Input

  • model – COBRA model structure

Outputs

  • resutl_tab – number of reactions obtained for each condition
  • solx - solution vector
  • lprxns – rxns indices for LP solution
  • l1rxns – rxns indices for L1 solution
  • l0rxns – rxns indices for L0 solution