BiGG¶
- listBiGGModels()¶
Reads from url http://bigg.ucsd.edu/api/v2/models
USAGE:
[str] = listBiGGModels()
- OUTPUT:
str: result of url read
- loadBiGGModel(model_ids, format, multichoice)¶
Reads from url http://bigg.ucsd.edu/api/v2/models
USAGE:
model = listBiGGModel(model_ids)
OPTIONAL INPUTS:
- model_ids: The BiGG ID(s) of the model(s). If no ID is provided (either empty or no arguments) a gui
will ask for the model to load.
- format: The format from Bigg to load. Either ‘sbml’ or (‘mat’).
Default(‘mat’)
- multichoice: Whether multiple models can be loaded if no ids are
given. (Default: true)
- OUTPUT:
- varargout: The models in the order of the selected ids. If
multiple models are selected in the dialog, a struct is provided with the models being fields of that struct.
Examples
- Load a specific model from the mat file of the BiGG database
model = loadBiGGModel(‘e_coli_core’);
- Load several models from the BiGG database at once
[model1, model2, … = loadBiGGModel({‘bigg_id1’,’bigg_id2’,…});
- Load model from the BiGG database sbml files
model = loadBiGGModel(‘iJR904’,’sbml’);