Eschermap

flux2json(model, FBAtype, outputFolder)[source]

This function print predicted fluxes to a json file used for escher map. The json file generated here could be directly used in EshcerMap https://escher.github.io/#/ to visualise the flux distribution

model2escher(model)[source]

this function prepare the model to draw escher map

EscherMap only accept model in Json format. Some reaction IDs in Recon3D are started with number,which generating issue when converted into Json file. The function here add ‘A_’ to the reaction IDs starting with number