d3flux

by Peter St. John

Tags: visualization


This package implements a d3.js based visualization tool for cobrapy models.

escher

by Zachary A. King

Tags: visualization


Escher is a web-based tool for building, viewing, and sharing visualizations of biological pathways. These ‘pathway maps’ are a great way to contextualize data about metabolism.

SAMMI

by Andre Schultz

Tags: visualization


SAMMI is an interactive tool for the visualization of constraint-based models. While automated features allow for easy network partitioning, navigation, and node positioning, SAMMI also offers a wide array of manual map editing features. This combination allows for fast, context-specific visualization of metabolic networks as well as the development of standardized, large-scale, visually appealing maps.