Bigg¶
- listBiGGModels()[source]¶
Reads from url http://bigg.ucsd.edu/api/v2/models
- USAGE
[str] = listBiGGModels()
- OUTPUT
str – result of url read
- loadBiGGModel(model_ids, format, multichoice)[source]¶
Reads from url http://bigg.ucsd.edu/api/v2/models
- USAGE
model = listBiGGModel (model_ids)
- OPTIONAL INPUTS
model_ids – The BiGG ID(s) of the model(s). If no ID is provided (either empty or no arguments) a gui will ask for the model to load.
format – The format from Bigg to load. Either ‘sbml’ or (‘mat’). Default(‘mat’)
multichoice – Whether multiple models can be loaded if no ids are given. (Default: true)
- OUTPUT
varargout – The models in the order of the selected ids. If multiple models are selected in the dialog, a struct is provided with the models being fields of that struct.
Examples
- Load a specific model from the mat file of the BiGG database
model = loadBiGGModel(‘e_coli_core’);
- Load several models from the BiGG database at once
[model1, model2, … = loadBiGGModel({‘bigg_id1’,’bigg_id2’,…});
- Load model from the BiGG database sbml files
model = loadBiGGModel(‘iJR904’,’sbml’);