The COBRA Toolbox cobratoolbox logo

The COBRA Toolbox

  • Home

Getting Started

  • Installation

Using the Toolbox

  • Tutorials
  • Functions
    • Analysis
      • Dynamicfba
      • Sparsefba
      • Rfba
      • Multispecies
      • Nutritionalgorithm
      • Geometricfba
      • Relaxedfba
      • Room
      • Exploration
      • Sampling
      • Parsimoniousfba
      • Kldistance
      • Wholebody
      • Rumba
      • Transport
      • Moma
      • Fba
      • Qfca
      • Rmta
      • Percentilecalc
      • Subspaces
      • Igemrna
      • Thermo
      • Icongems
      • Findmiis
      • Robustnessanalysis
      • Topology
      • Ufba
      • Gmcs
      • Mdfba
      • Coupling
      • Fastforest
      • Fva
      • Persephone
      • Fluxenrichmentanalysis
      • Deletion
    • Base
    • Dataintegration
    • Design
    • Reconstruction
    • Visualization
  • Submodules
  • FAQ

Contributing

  • How to contribute
  • Development Plan

Project Information

  • How to cite
  • Citations
  • Support
  • Contact
  • Contributors
  • Funding
The COBRA Toolbox
  • Functions
  • Analysis

analysis

Analysis

AnalysisΒΆ

  • Dynamicfba
  • Sparsefba
  • Rfba
  • Multispecies
    • Microbiomemodelingtoolbox
    • Steadycom
  • Nutritionalgorithm
  • Geometricfba
  • Relaxedfba
  • Room
  • Exploration
    • Surfnetsubfunctions
  • Sampling
    • Barrierround
    • Achr
    • Chrr
  • Parsimoniousfba
  • Kldistance
  • Wholebody
    • Nutrition_modelling_toolbox
    • Io
    • Pscmtoolbox
  • Rumba
  • Transport
  • Moma
  • Fba
  • Qfca
  • Rmta
  • Percentilecalc
  • Subspaces
    • Rowreduce
    • Lsqr
    • Rank
    • Nullspace
    • Subspaceprojection
  • Igemrna
    • Filternonfluxreactions
    • Gt1
    • Inactivegenedeletion
    • Lt2
    • Findupdownregulatedgenes
    • Lt1
    • Calculatefluxshifts
    • Modelcreation
    • Filterratelimittingreactions
  • Thermo
    • Experimentaldesign
    • Utilities
    • Trainingmodel
    • Componentcontribution
    • Transport
    • Vonbertalanffy
    • Optcardthermo
    • Experimentaldata
    • Formulae
    • Findthermoconsistentfluxsubset
    • Thermofba
    • Groupcontribution
    • Molfiles
    • Protons
    • Directionalityreport
    • Reactantcontribution
    • Thermodirectionality
    • Inchi
  • Icongems
  • Findmiis
  • Robustnessanalysis
  • Topology
    • Graphhypergraphconversion
    • Fr
    • Conservedmoieties
    • Extremerays
    • Reactingmoieties
  • Ufba
  • Gmcs
  • Mdfba
  • Coupling
  • Fastforest
  • Fva
    • Fastfva
  • Persephone
    • Seqc_pipeline
    • Additionalfunctions
  • Fluxenrichmentanalysis
  • Deletion
    • Syntheticlethals
Function list

Next Previous

© Copyright 2017-2026, The COBRA Toolbox developers.

Built with Sphinx using a theme provided by Read the Docs.