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The COBRA Toolbox

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The COBRA Toolbox
  • Functions

FunctionsΒΆ

Analysis

  • Analysis
    • Qfca
    • Rmta
    • Moma
    • Percentilecalc
    • Geometricfba
    • Multispecies
    • Robustnessanalysis
    • Kldistance
    • Icongems
    • Rfba
    • Nutritionalgorithm
    • Topology
    • Parsimoniousfba
    • Fva
    • Exploration
    • Coupling
    • Fluxenrichmentanalysis
    • Rumba
    • Deletion
    • Igemrna
    • Fastforest
    • Fba
    • Findmiis
    • Persephone
    • Thermo
    • Sampling
    • Wholebody
    • Mdfba
    • Transport
    • Dynamicfba
    • Ufba
    • Sparsefba
    • Room
    • Gmcs
    • Subspaces
    • Relaxedfba
Function list

Base

  • Base
    • Paths
    • Codeconsistency
    • Ci
    • Install
    • Utilities
    • Cobrarrow
    • Solvers
    • Io
Function list

Data integration

  • Dataintegration
    • Transcriptomics
    • Metaboannotator
    • Metanetxmapper
    • Metabotools
    • Chemoinformatics
    • Xomicstomodel
    • Fluxomics
Function list

Design

  • Design
    • Optforcegams
    • Optforce
    • Trimgdel
    • Optenvelope
Function list

Reconstruction

  • Reconstruction
    • Metaboreport
    • Refinement
    • Demeter
    • Rbionet
    • Growthexpmatch
    • Comparison
    • Fastgapfill
    • Modelgeneration
Function list

Visualization

  • Visualization
    • Maps
    • Efmviz
    • Entropicfba
    • Celldesigner
    • Sammim
    • Metaboliccartography
    • Convert
    • Visualizeepistasis
    • Paint4net
    • Createmetintrcnetwork
    • Eschermap
Function list


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