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The COBRA Toolbox

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Using the Toolbox

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The COBRA Toolbox
  • Functions

FunctionsΒΆ

Analysis

  • Analysis
    • Transport
    • Relaxedfba
    • Fva
    • Ufba
    • Parsimoniousfba
    • Fastforest
    • Percentilecalc
    • Qfca
    • Rumba
    • Moma
    • Room
    • Igemrna
    • Gmcs
    • Persephone
    • Rfba
    • Mdfba
    • Multispecies
    • Robustnessanalysis
    • Coupling
    • Findmiis
    • Rmta
    • Subspaces
    • Dynamicfba
    • Kldistance
    • Fba
    • Sparsefba
    • Nutritionalgorithm
    • Deletion
    • Thermo
    • Fluxenrichmentanalysis
    • Sampling
    • Topology
    • Exploration
    • Icongems
    • Geometricfba
    • Wholebody
Function list

Base

  • Base
    • Ci
    • Paths
    • Codeconsistency
    • Io
    • Cobrarrow
    • Utilities
    • Solvers
    • Install
Function list

Data integration

  • Dataintegration
    • Chemoinformatics
    • Xomicstomodel
    • Fluxomics
    • Metabotools
    • Metaboannotator
    • Metanetxmapper
    • Transcriptomics
Function list

Design

  • Design
    • Optenvelope
    • Optforce
    • Optforcegams
    • Trimgdel
Function list

Reconstruction

  • Reconstruction
    • Modelgeneration
    • Growthexpmatch
    • Rbionet
    • Refinement
    • Demeter
    • Fastgapfill
    • Metaboreport
    • Comparison
Function list

Visualization

  • Visualization
    • Paint4net
    • Visualizeepistasis
    • Upsetplot
    • Paint4net
    • Metaboliccartography
    • Sammim
    • Maps
    • Entropicfba
    • Createmetintrcnetwork
    • Eschermap
    • Celldesigner
    • Convert
    • Efmviz
Function list


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