Metaboreport¶
- generateMetaboReport(modelProperties, reportDir, orgNames)[source]¶
This function generates the metaboReport.
INPUT modelProperties strcuture containing the model properties, generated with
Ines Thiele 2022
- generateMetaboScore(model, nworkers)[source]¶
Analyzes metabolic model properties and generates scores. This function analyzes various aspects of the metabolic model, including basic properties, stoichiometric consistency, matrix conditioning, annotation of metabolites, reactions, genes, SBO terms, and generates overall scores for different aspects.
- USAGE
[modelProp, ScoresOverall] = generateMetaboScore (model, nworkers)
- INPUTS
- model – metabolic model structure (COBRA Toolbox format)
- nworkers – (optional) number of workers for parallel processing
- OUTPUT
- modelProp – structure containing various properties of the metabolic model
- ScoresOverall – structure containing overall scores for different aspects
Example
[modelProp, ScoresOverall] = generateMetaboScore(model) [modelProp, ScoresOverall] = generateMetaboScore(model, 4)