Transport

transportReactionBool(model, originCompartment, destinationCompartment, unidirectionalBool)

Return a boolean vector indicating which reactions transport between compartments.

USAGE:

[transportRxnBool] = transportReactionBool (model, originCompartment, destinationCompartment, unidirectionalBool)

INPUT:

model – COBRA model structure with fields:

• .S - m x n stoichiometric matrix

• .mets - m x 1 metabolite abbreviations (with compartments)

• .lb - n x 1 lower flux bounds

• .ub - n x 1 upper flux bounds

OPTIONAL INPUTS:

• originCompartment – origin compartment (only relevant for unidirectional)

• destinationCompartment – destination compartment (only relevant for unidirectional)

• unidirectionalBool – 1 = only return transport reactions between specified compartments in the origin to destination direction

OUTPUT:

transportRxnBool – boolean vector indicating transport reactions