Transport

transportReactionBool(model, originCompartment, destinationCompartment, unidirectionalBool)[source]

Return a boolean vector indicating which reactions transport between compartments.

USAGE:

[transportRxnBool] = transportReactionBool (model, originCompartment, destinationCompartment, unidirectionalBool)

INPUT:

model – COBRA model structure with fields:

  • .S

  • .mets

OPTIONAL INPUTS:

  • originCompartment – origin compartment (only relevant for unidirectional)

  • destinationCompartment – destination compartment (only relevant for unidirectional)

  • unidirectionalBool – 1 = only return transport reactions between specified compartments in the origin to destination direction

OUTPUT:

transportRxnBool – boolean vector indicating transport reactions