Preparedata¶
- preprocessingOmicsModel(inputData, setMinActiveFlux, setMaxActiveFlux, specificData, TolMaxBoundary)[source]¶
Prepare data for the omicsModelGeneration function
- USAGE:
specificData = preprocessingOmicsModel (inputData)
- INPUT:
inputData – Location of the file containing the optional variables where the first row of each column represents the name of the optional variables and the following rows represent the data on them.
- OPTIONAL INPUT:
setMinActiveFlux {0}, 1 - change the LB of forced – active reactions based on the (primal) feasibility tolerance (feasTol*100)
- setMaxActiveFlux {0}, 1 - change the UB of forced – active reactions based on the (primal) feasibility
tolerance (based on param.TolMaxBoundary, feasTol*1e9 if not provided)
- specificData: Structure containing the optional variables to
generate a context-specific omics model
TolMaxBoundary: The reaction boundary’s maximum value (Default: feasTol*1e9).
- OUTPUT:
specificData – Structure containing the additional optional variables to generate a context-specific omics model