Fluxenrichmentanalysis¶

FEA(model, rxnSet, group)[source]¶

Significance analysis - Flux enrichment analysis using hypergeometric 1-sided test and FDR correction for multiple testing

USAGE

resultCell = FEA (model, rxnSet, ‘subSystems’)

INPUTS

model – COBRA structure model
rxnSet – reaction set to be enriched (vector of reaction indices e.g. 1:10)
group – model.group structure e.g. ‘subSystems’ : FEA looks for significantly enriched subsystems in rxnSet

OUTPUT

resultCell – cell structure of enriched groups

Example

load ecoli_core_model; resultCell = FEA(modelEcore, 1:10, ‘subSystems’);