Transport

findTransRxns(model, inclExc, rxnInds, inclObjAsExc, irrevFlag)

Identifes all transport reactions in a model, which are defined as reactions involved with metabolites in more than 1 compartment

USAGE:

[transRxns, nonTransRxns, transRxnsBool] = findTransRxns(model, inclExc, rxnInds, inclObjAsExc, irrevFlag)

INPUT:

model: COBRA model structure

OPTIONAL INPUT:

inclExc: includes exchange reactions as transport = true

(Default = false)

rxnInds: indices of reactions to test for transport activity.

(default = test all columns of model.S)

inclObjAsExc: includes objective as an exchange reaction = true - this is

passed to findExcRxns. (default = false)

irrevFlag: model is irreversible = true - this is passed to findExcRxns.

(default=false)

OUTPUTS:

transRxns: transport reactions in rxnInds nonTransRxns: non-transport reactions in rxnInds transRxnsBool: checks if inclExc or isNonexchangeTransport rxns vector is equal to 1