Gt1

findGenesAboveThresholdGT1(threshold, geneNames, expressionValues)

Filters transcriptomics dataset and returns highly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘High’) containing genes with expression value above the given global threshold value

USAGE

genes = findGenesAboveThresholdGT1 (threshold, geneNames, expressionValues)

INPUTS

• threshold – double

• geneNames – char cell array ix1 with all gene Ids

• expressionValues – double cell array ix1 with gene expression values

OUTPUTS

genes – cell array ix3 where columns include geneId, expressionValue, expression classification - ‘High’

findGenesBelowThresholdGT1(threshold, geneNames, expressionValues)

Filters transcriptomics dataset and returns lowly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘Low’) containing genes with expression value below the given global threshold value

USAGE

genes = findGenesBelowThresholdGT1 (threshold, geneNames, expressionValues)

INPUTS

• threshold – double

• geneNames – char cell array ix1 with all gene Ids

• expressionValues – double cell array ix1 with gene expression values

OUTPUTS

genes – cell array ix3 where columns include geneId, expressionValue, expression classification - ‘Low’

findHighlyLowlyExpressedGenesGT1(threshold, geneNames, expressionValues)

Filters transcriptomics dataset and returns highly and lowly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘High’/’Low’) containing genes with expression value above and below the given global threshold value

USAGE

genes = findHighlyLowlyExpressedGenesGT1 (threshold, geneNames, expressionValues)

INPUTS

• threshold – double

• geneNames – char cell array ix1 with all gene Ids

• expressionValues – double cell array ix1 with gene expression values

OUTPUTS

genes – cell array ix3 where columns include geneId, expressionValue, expression classification - ‘High’/’Low’