Lt1

findGenesAboveThresholdLocal1(threshold, trDataPath, sheetIndex)[source]

Filters transcriptomics dataset and returns highly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘High’, applied threshold type - ‘Local’) containing genes with expression value above the given global threshold value and above the local gene specific threshold when multiple transcriptomics datasets available

USAGE

genes = findGenesAboveThresholdLocal1 (threshold, trDataPath, sheetIndex)

INPUTS

  • threshold – double

  • trDataPath – char full transcriptomics data filename

  • sheetIndex – double target transcriptomics dataset sheet index

OUTPUTS

genes – cell array ix4 where columns include geneId, expressionValue, expression classification - ‘High’/’Low’ and applied threshold type - ‘Local’

findGenesBelowThresholdLocal1(threshold, trDataPath, sheetIndex)[source]

Filters transcriptomics dataset and returns lowly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘Low’, applied threshold type - ‘Global’/’Local’) containing genes with expression value below the given global threshold value or above the local gene specific threshold when multiple transcriptomics datasets available

USAGE

genes = findGenesBelowThresholdLocal1 (threshold, trDataPath, sheetIndex)

INPUTS

  • threshold – double

  • trDataPath – char full transcriptomics data filename

  • sheetIndex – double target transcriptomics dataset sheet index

OUTPUTS

genes – cell array ix4 where columns include geneId, expressionValue, expression classification - ‘Low’ and applied threshold type - ‘Global’/’Local’

findHighlyLowlyExpressedGenesLT1(threshold, trDataPath, sheetIndex)[source]

Filters transcriptomics dataset and returns highly and lowly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘High’/’Low’, applied threshold type - ‘Global’/’Local’) when multiple transcriptomics datasets available

USAGE

genes = findHighlyLowlyExpressedGenesLT1 (threshold, trDataPath, sheetIndex)

INPUTS

  • threshold – double

  • trDataPath – char full transcriptomics data filename

  • sheetIndex – double target transcriptomics dataset sheet index

OUTPUTS

genes – cell array ix4 where columns include geneId, expressionValue, expression classification - ‘High’/’Low’ and applied threshold type - ‘Global’/’Local’