Lt2

findGenesAboveThresholdLocal2(lowerThreshold, upperThreshold, trDataPath, sheetIndex)[source]

Filters transcriptomics dataset and returns highly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘High’, applied threshold type - ‘Global’/’Local’) containing genes with expression value above the given upper global threshold value or above the given lower threshold value and the local gene specific threshold when multiple transcriptomics datasets available

USAGE

genes = findGenesAboveThresholdLocal2 (lowerThreshold, upperThreshold, trDataPath, sheetIndex)

INPUTS

  • lowerThreshold – double

  • upperThreshold – double

  • trDataPath – char full transcriptomics data filename

  • sheetIndex – double target transcriptomics dataset sheet index

OUTPUTS

genes – cell array ix4 where columns include geneId, expressionValue, expression classification - ‘High’ and applied threshold type - ‘Global’/’Local’

findGenesBelowThresholdLocal2(lowerThreshold, upperThreshold, trDataPath, sheetIndex)[source]

Filters transcriptomics dataset and returns lowly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘Low’, applied threshold type - ‘Global’/’Local’) containing genes with expression value below the given lower global threshold value or below the given upper threshold value and the local gene specific threshold when multiple transcriptomics datasets available

USAGE

genes = findGenesBelowThresholdLocal2 (lowerThreshold, upperThreshold, trDataPath, sheetIndex)

INPUTS

  • lowerThreshold – double

  • upperThreshold – double

  • trDataPath – char full transcriptomics data filename

  • sheetIndex – double target transcriptomics dataset sheet index

OUTPUTS

genes – cell array ix4 where columns include geneId, expressionValue, expression classification - ‘Low’ and applied threshold type - ‘Global’/’Local’

findHighlyLowlyExpressedGenesLT2(lowerThreshold, upperThreshold, trDataPath, sheetIndex)[source]

Filters transcriptomics dataset and returns highly and lowly expressed gene cell array (columns: geneId, expressionValue, expression classification - ‘High’/’Low’, applied threshold type - ‘Global’/’Local’) when multiple transcriptomics datasets available

USAGE

genes = findHighlyLowlyExpressedGenesLT2 (lowerThreshold, upperThreshold, trDataPath, sheetIndex)

INPUTS

  • lowerThreshold – double

  • upperThreshold – double

  • trDataPath – char full transcriptomics data filename

  • sheetIndex – double target transcriptomics dataset sheet index

OUTPUTS

genes – cell array ix4 where columns include geneId, expressionValue, expression classification - ‘High’/’Low’ and applied threshold type - ‘Global’/’Local’