Experimentaldesign

priorityKeqMeasurement(modelT)[source]

Optimal order of Keq measurement.

Finds the optimal order of Keq measurement to completely define all standard Gibbs energies of formation for all metabolites. If the end of the loop is all reactions with two metabolites each then the loop is terminated

USAGE

[priorityKeq, numNonKeqMet] = priorityKeqMeasurement (modelT)

INPUT

modelT – structure with fields:

  • .S

  • .met(m).dGft0Source

OUTPUTS

  • priorityKeq – structure indicating which reactions to measure Keq:

    • priorityKeq{p, 1} - rxn abbr

    • priorityKeq{p, 2} - rxn name

    • priorityKeq{p, 3} - met abbr

    • priorityKeq{p, 4} - rxn name

    • priorityKeq{p, 5} - met name

    • priorityKeq{p, 5} - number of reactions the same metabolite appears in this give options for which reaction to measure

  • numNonKeqMet – number of metabolites without data at each iteration